saramathieson

Research

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2025

On the use of generative models for evolutionary inference of malaria vectors from genomic data
On the use of generative models for evolutionary inference of malaria vectors from genomic data
Amelia Adibe Eneli, Pui Chung Siu, Manolo F. Perez, Austin Burt, Matteo Fumagalli, Sara Mathieson
Cold Spring Harbor Laboratory  ·  27 Jun 2025  ·  doi:10.1101/2025.06.26.661760

2024

Identity-by-descent IBD segment outlier detection in endogamous populations using pedigree cohorts
Identity-by-descent (IBD) segment outlier detection in endogamous populations using pedigree cohorts
Shi Jie Samuel Tan, Huyen Trang Dang, Sarah Keim, Maja Bućan, Sara Mathieson
Cold Spring Harbor Laboratory  ·  09 Aug 2024  ·  doi:10.1101/2024.08.07.607051
Interpreting generative adversarial networks to infer natural selection from genetic data
Interpreting generative adversarial networks to infer natural selection from genetic data
Rebecca Riley, Iain Mathieson, Sara Mathieson
GENETICS  ·  22 Feb 2024  ·  doi:10.1093/genetics/iyae024

2023

The genomic footprint of social stratification in admixing American populations
The genomic footprint of social stratification in admixing American populations
Alex Mas-Sandoval, Sara Mathieson, Matteo Fumagalli
eLife  ·  01 Dec 2023  ·  doi:10.7554/eLife.84429
Interpreting Generative Adversarial Networks to Infer Natural Selection from Genetic Data
Interpreting Generative Adversarial Networks to Infer Natural Selection from Genetic Data
Rebecca Riley, Iain Mathieson, Sara Mathieson
Cold Spring Harbor Laboratory  ·  08 Mar 2023  ·  doi:10.1101/2023.03.07.531546

2022

The genomic footprint of social stratification in admixing American populations
The genomic footprint of social stratification in admixing American populations
Alex Mas-Sandoval, Sara Mathieson, Matteo Fumagalli
Cold Spring Harbor Laboratory  ·  18 Nov 2022  ·  doi:10.1101/2022.11.16.516754

2021

Automatic inference of demographic parameters using generative adversarial networks
Automatic inference of demographic parameters using generative adversarial networks
Zhanpeng Wang, Jiaping Wang, Michael Kourakos, Nhung Hoang, Hyong Hark Lee, Iain Mathieson, Sara Mathieson
Molecular Ecology Resources  ·  03 May 2021  ·  doi:10.1111/1755-0998.13386

2020

Open collaborative writing with Manubot
Open collaborative writing with Manubot
Daniel S. Himmelstein, Vincent Rubinetti, David R. Slochower, Dongbo Hu, Venkat S. Malladi, Casey S. Greene, Anthony Gitter
PLOS Computational Biology  ·  04 Dec 2020  ·  doi:10.1371/journal.pcbi.1007128
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Manubot
Manuscript Source
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open-science collaboration
Automatic inference of demographic parameters using Generative Adversarial Networks
Automatic inference of demographic parameters using Generative Adversarial Networks
Zhanpeng Wang, Jiaping Wang, Michael Kourakos, Nhung Hoang, Hyong Hark Lee, Iain Mathieson, Sara Mathieson
Cold Spring Harbor Laboratory  ·  06 Aug 2020  ·  doi:10.1101/2020.08.05.237834
Ancestral Haplotype Reconstruction in Endogamous Populations using Identity-By-Descent
Ancestral Haplotype Reconstruction in Endogamous Populations using Identity-By-Descent
Kelly Finke, Michael Kourakos, Gabriela Brown, Huyen Trang Dang, Shi Jie Samuel Tan, …, Shweta Ramdas, Alejandro A. Schäffer, Rachel L. Kember, Maja Bućan, Sara Mathieson
Cold Spring Harbor Laboratory  ·  16 Jan 2020  ·  doi:10.1101/2020.01.15.908459
Constructing knowledge graphs and their biomedical applications
Constructing knowledge graphs and their biomedical applications
David N. Nicholson, Casey S. Greene
Computational and Structural Biotechnology Journal  ·  01 Jan 2020  ·  doi:10.1016/j.csbj.2020.05.017

2018

Sci-Hub provides access to nearly all scholarly literature
Sci-Hub provides access to nearly all scholarly literature
Daniel S Himmelstein, Ariel Rodriguez Romero, Jacob G Levernier, Thomas Anthony Munro, Stephen Reid McLaughlin, Bastian Greshake Tzovaras, Casey S Greene
eLife  ·  01 Mar 2018  ·  doi:10.7554/eLife.32822